Prerequisites
You’ll need a laptop with a web browser and a terminal
| Setup | ||
| 00:00 | 1. Introduction to Docker | |
| 00:30 | 2. Cleaning up Docker | |
| 00:40 | 3. Sharing files with the host with Docker | |
| 00:55 | 4. Long running services with Docker | |
| 01:10 | 5. Build your own container image with Docker | |
| 01:40 | 6. Docker advanced topics | |
| 02:00 | 7. Run containers on HPC with Shifter (and Singularity) | |
| 02:20 | 8. A bioinformatics example: BLAST | |
| 02:35 | 9. RStudio deployment for fun and profit | |
| 02:55 | 10. Bioinformatics meets RStudio in containers | |
| 03:15 | 11. Making Python not awful with containers | |
| 03:35 | 12. Containers for machine learning | |
| 03:55 | 13. Molecular dynamics with GPU containers | |
| 04:15 | Finish |
The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.