Prerequisites
You’ll need a laptop with a web browser and a terminal. See also the Setup page.
You might want to brush up on the fundamentals of the Linux Shell for HPC.
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| Setup | ||
| 00:00 | 1. Introduction to containers | |
| 00:10 | 2. Basics of Singularity | |
| 00:40 | 3. Breakout Room 1: use BLAST from a container | |
| 01:00 | 4. BREAK | |
| 01:10 | 5. Share files and variables with the host machine | |
| 01:40 | 6. Breakout room 2: BLAST reprise, and RNA sequencing pipeline | |
| 02:10 | 7. BREAK | |
| 02:20 | 8. Building images with Docker | |
| 02:50 | 9. Breakout room 3: design container images | |
| 03:10 | 10. BONUS: Reproducible scientific workflows | |
| 03:20 | 11. BONUS: Setup Singularity on your machine | |
| 03:30 | Finish |
The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.